WatCon Package

WatCon is organized in the following manner:

Image sourced from DOI: 10.1021/jacsau.5c00447

Details on the contents of WatCon are outlined below.

Subpackages

Submodules

• WatCon package
  • Subpackages
  • Submodules
  • Module contents
• WatCon.sequence_processing module
• WatCon.generate_dynamic_networks module
• WatCon.generate_static_networks module
• WatCon.find_conserved_networks module
  • cluster_coordinates_only()
  • cluster_nodes()
  • collect_coordinates()
  • combine_graphs()
  • create_clustered_network()
  • find_clusters_from_densities()
  • find_commonality()
  • get_coordinates_from_pdb()
  • get_coordinates_from_topology()
  • identify_clustered_angles()
  • identify_conserved_water_clusters()
  • identify_conserved_water_interactions_clustering()
  • plot_commonality()
• WatCon.residue_analysis module
  • classify_waters()
  • get_all_water_distances()
  • get_interaction_counts()
  • get_per_residue_interactions()
  • histogram_metrics()
  • plot_interactions_from_angles()
  • plot_residue_interactions()
• WatCon.visualize_structures module
  • export_graph_to_pdb()
  • plot_consevation_angles()
  • project_clusters()
  • pymol_project_oxygen_network()
  • save_xyz()