Index

C

check_conditions() (in module WatCon.WatCon) classify_waters() (in module WatCon.residue_analysis) cluster_coordinates_only() (in module WatCon.find_conserved_networks)

cluster_nodes() (in module WatCon.find_conserved_networks) collect_coordinates() (in module WatCon.find_conserved_networks) combine_graphs() (in module WatCon.find_conserved_networks) create_clustered_network() (in module WatCon.find_conserved_networks)

E

export_graph_to_pdb() (in module WatCon.visualize_structures)

F

find_clusters_from_densities() (in module WatCon.find_conserved_networks)

find_commonality() (in module WatCon.find_conserved_networks)

G

get_all_water_distances() (in module WatCon.residue_analysis) get_coordinates_from_pdb() (in module WatCon.find_conserved_networks)

get_coordinates_from_topology() (in module WatCon.find_conserved_networks) get_interaction_counts() (in module WatCon.residue_analysis) get_per_residue_interactions() (in module WatCon.residue_analysis)

H

histogram_metrics() (in module WatCon.residue_analysis)

I

identify_clustered_angles() (in module WatCon.find_conserved_networks)

identify_conserved_water_clusters() (in module WatCon.find_conserved_networks) identify_conserved_water_interactions_clustering() (in module WatCon.find_conserved_networks)

M

module WatCon WatCon.find_conserved_networks WatCon.residue_analysis WatCon.tests WatCon.visualize_structures WatCon.WatCon

P

parse_analysis() (in module WatCon.WatCon) parse_arguments() (in module WatCon.WatCon) parse_inputs() (in module WatCon.WatCon) plot_commonality() (in module WatCon.find_conserved_networks)

plot_consevation_angles() (in module WatCon.visualize_structures) plot_interactions_from_angles() (in module WatCon.residue_analysis) plot_residue_interactions() (in module WatCon.residue_analysis) project_clusters() (in module WatCon.visualize_structures) pymol_project_oxygen_network() (in module WatCon.visualize_structures)

R

run_watcon() (in module WatCon.WatCon)

run_watcon_postanalysis() (in module WatCon.WatCon)

S

save_xyz() (in module WatCon.visualize_structures)

W

WatCon module WatCon.find_conserved_networks module WatCon.residue_analysis module

WatCon.tests module WatCon.visualize_structures module WatCon.WatCon module